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Fast Breaking Comments

By Wei Pan

ESI Special Topics, December 2003
Citing URL - http://www.esi-topics.com/fbp/2003/december03-WeiPan.html

Wei Pan answers a few questions about this month's fast breaking paper in the field of Computer Science.


From •>>December 2003

Field: Computer Science
Article Title: A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
Authors: Pan, W
Journal: BIOINFORMATICS
Volume: 18
Page: 546-554
Year: APR 2002
* Univ Minnesota, Sch Publ Hlth, Div Biostat, A460 Mayo, MMC 303, 420 Delaware St SE, Minneapolis, MN 55455 USA.
* Univ Minnesota, Sch Publ Hlth, Div Biostat, Minneapolis, MN 55455 USA.

ST:  Why do you think your paper is highly cited?

It was a timely review and a comparison of existing/new statistical methods on a hot topic that is of great interest to biologists, statisticians, and others.

ST:  Does it describe a new discovery or a new methodology that's useful to others?

It is mainly a review, although a new method (Mixture Model Method) was developed by myself and my colleagues and is described for the purpose of comparison.

ST:  Could you summarize the significance of your paper in layman's terms?

It is of great interest to detect genes with differential expression in microarray experiments, but due to the high noise and the special feature of data (i.e., "a large number of genes, a small number of arrays"), it is necessary to apply a statistical method. However, a key question is, "Among many existing and new methods, which one should be used?" I reviewed and compared several important methods.

ST:  How did you become involved in this research?

I became involved thanks to my collaborators, Dr. Chap Lin and Dr. Jizhen Lin, both at the University of Minnesota, who brought a microarray dataset to my attention and thus introduced me to the field.End

Wei Pan, Ph.D.
Associate Professor
Division of Biostatistics
School of Public Health
University of Minnesota
Minneapolis, MN, USA

ESI Special Topics, December 2003
Citing URL - http://www.esi-topics.com/fbp/2003/december03-WeiPan.html

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