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Fast Breaking Comments

By Dilip Rajagopalan

ESI Special Topics, April 2005
Citing URL - http://www.esi-topics.com/fbp/2005/april05-DilipRajagopalan.html

Dilip Rajagopalan answers a few questions about this month's fast breaking paper in the field of Computer Science.


From •>>April 2005  

Field: Computer Science
Article Title: A comparison of statistical methods for analysis of high density oligonucleotide array data
Authors: Rajagopalan, D
Journal: BIOINFORMATICS
Volume: 19
Page: 1469-1476
Year: AUG 12 2003
* GlaxoSmithKline Phamraceut R&D, Bioinformat Sci, 709 Swedeland Rd, King Of Prussia, PA 19406 USA.
* GlaxoSmithKline Phamraceut R&D, Bioinformat Sci, King Of Prussia, PA 19406 USA.

ST:  Why do you think your paper is highly cited?


“My paper presents a systematic comparison of some of the most popular data analysis methods, and presents the reader with the relative advantages and disadvantages of various methods.”

I believe my paper is highly cited because it deals with data analysis in a very popular area of molecular biology research: gene expression profiling. This technique enables the simultaneous measurement of expression levels of thousands of genes. Such data can be used in the study of disease processes, drug mechanism of action, etc., at a biomolecular level. The number of papers published in this area is growing at an exponential rate.

ST:  Does it describe a new discovery or a new methodology that's useful to others?

My paper does not describe a new discovery or methodology; rather it presents a comparison of data analysis methods for gene-expression data measured using a popular technology known as AffymetrixTM oligonucleotide arrays.

ST:  Could you summarize the significance of your paper in layman's terms?

Gene expression profiling experiments present a considerable challenge in data analysis. Many statistical methods have been developed to address this challenge. It is not clear which of these methods gives the best results. My paper presents a systematic comparison of some of the most popular data-analysis methods, and presents the reader with the relative advantages and disadvantages of various methods.

ST:  How did you become involved in this research?

I work in the Bioinformatics department at GlaxoSmithKline, the second largest pharmaceutical company in the world. Gene expression profiling using microarrays is an important technology we utilize in our drug discovery research. It is very important that our scientists use the best possible techniques for data analysis. This research helps my colleagues determine the best possible method to use for analysis of their experimental data.End

Dilip Rajagopalan
GlaxoSmithKline R&D/Bioinformatics
King of Prussia, PA, USA

ESI Special Topics, April 2005
Citing URL - http://www.esi-topics.com/fbp/2005/april05-DilipRajagopalan.html

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