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ESI Special Topics, November 2005
Citing URL: http://www.esi-topics.com/fmf/maps/november2005-map.html

This Research Front on RNA SECONDARY STRUCTURE from the field of Biology & Biochemistry was selected for mapping from the list of Fast Moving Fronts for November 2005. The map is a diagrammatic representation of the ten core papers comprising the front. Each circle represents a highly cited paper whose bibliographic information is displayed when the user clicks on the circle. The lines between circles represent the strongest co-citation links for each paper (that is, indicating that the papers are frequently cited together). Papers close to each other on the map are generally more highly co-cited.


Klein-2003 Ruan-2004 Ji-2004 Dowell-2004 Knudsen-2004 Hofacker-2004 Gardner-2004 Kidner-2005 Washietl-2005 Weber-2005
 RNA SECONDARY STRUCTURE  


 Core Papers 


Label: Klein-2003
Title: RSEARCH: Finding homologs of single structured RNA sequences
Journal: BMC BIOINFORMATICS, 4: art. no.-44 SEP 22 2003
Citations: 19
Authors: Klein, RJ;Eddy, SR
Addresses:
Washington Univ, Sch Med, Howard Hughes Med Inst, St Louis, MO 63110 USA
Washington Univ, Sch Med, Howard Hughes Med Inst, St Louis, MO 63110 USA
Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA


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Label: Ji-2004
Title: A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences
Journal: BIOINFORMATICS, 20 (10): 1591-1602 JUL 1 2004
Citations: 9
Authors: Ji, YM;Xu, X;Stormo, GD
Addresses:
Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA
Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA


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Label: Ruan-2004
Title: An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots
Journal: BIOINFORMATICS, 20 (1): 58-66 JAN 1 2004
Citations: 8
Authors: Ruan, JH;Stormo, GD;Zhang, WX
Addresses:
Washington Univ, Dept Comp Sci, St Louis, MO 63130 USA
Washington Univ, Dept Comp Sci, St Louis, MO 63130 USA
Washington Univ, Dept Genet, St Louis, MO 63130 USA


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Label: Hofacker-2004
Title: Alignment of RNA base pairing probability matrices
Journal: BIOINFORMATICS, 20 (14): 2222-2227 SEP 22 2004
Citations: 7
Authors: Hofacker, IL;Bernhart, SHF;Stadler, PF
Addresses:
Univ Vienna, Inst Theoret Chem & Mol Strukturbiol, Wahringerstr 17, A-1090 Vienna, Austria
Univ Vienna, Inst Theoret Chem & Mol Strukturbiol, A-1090 Vienna, Austria
Univ Leipzig, Inst Informat, D-04103 Leipzig, Germany


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Label: Knudsen-2004
Title: Evolutionary rate variation and RNA secondary structure prediction
Journal: COMPUT BIOL CHEM, 28 (3): 219-226 JUL 2004
Citations: 7
Authors: Knudsen, B;Andersen, ES;Damgaard, C;Kjems, J;Gorodkin, J
Addresses:
Aarhus Univ, Dept Mol Biol, C-F Mollers Alle,Bldg 130, DK-8000 Aarhus C, Denmark
Aarhus Univ, Dept Mol Biol, DK-8000 Aarhus C, Denmark
Univ Aarhus, Bioinformat Res Ctr, DK-8000 Aarhus, Denmark
Royal Vet & Agr Univ, Inst Anim Sci & Anim Hlth, Div Genet, DK-1870 Frederiksberg C, Denmark


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Label: Dowell-2004
Title: Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
Journal: BMC BIOINFORMATICS, 5: art. no.-71 JUN 4 2004
Citations: 5
Authors: Dowell, RD;Eddy, SR
Addresses:
Washington Univ, Sch Med, Howard Hughes Med Inst, 4444 Forest pk Blvd,Box 8510, St Louis, MO 63108 USA
Washington Univ, Sch Med, Howard Hughes Med Inst, St Louis, MO 63108 USA
Washington Univ, Sch Med, Dept Genet, St Louis, MO 63108 USA


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Label: Gardner-2004
Title: A comprehensive comparison of comparative RNA structure prediction approaches
Journal: BMC BIOINFORMATICS, 5: art. no.-140 SEP 30 2004
Citations: 5
Authors: Gardner, PP;Giegerich, R
Addresses:
Univ Copenhagen, Dept Evolutionary Biol, Univ Pk 15, DK-2100 Copenhagen O, Denmark
Univ Copenhagen, Dept Evolutionary Biol, DK-2100 Copenhagen O, Denmark
Univ Bielefeld, Fac Technol, D-33501 Bielefeld, Germany


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Label: Washietl-2005
Title: Fast and reliable prediction of noncoding RNAs
Journal: PROC NAT ACAD SCI USA, 102 (7): 2454-2459 FEB 15 2005
Citations: 5
Authors: Washietl, S;Hofacker, IL;Stadler, PF
Addresses:
Univ Vienna, Dept Theoret Chem & Struct Biol, Wahringerstr 17, A-1090 Vienna, Austria
Univ Vienna, Dept Theoret Chem & Struct Biol, A-1090 Vienna, Austria
Univ Leipzig, Dept Comp Sci, Bioinformat Grp, D-04107 Leipzig, Germany
Univ Leipzig, Interdisciplinary Ctr Bioinformat, D-04107 Leipzig, Germany


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Label: Weber-2005
Title: New human and mouse microRNA genes found by homology search
Journal: FEBS J, 272 (1): 59-73 JAN 2005
Citations: 5
Authors: Weber, MJ
Addresses:
CNRS, Lab Biol Mol Eucaryote, UMR5099, 118 Route Narbonne, F-31062 Toulouse, France
CNRS, Lab Biol Mol Eucaryote, UMR5099, F-31062 Toulouse, France
Univ Toulouse 3, F-31062 Toulouse, France


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Label: Kidner-2005
Title: The developmental role of microRNA in plants
Journal: CURR OPIN PLANT BIOL, 8 (1): 38-44 FEB 2005
Citations: 3
Authors: Kidner, CA;Martienssen, RA
Addresses:
Univ Edinburgh, Inst Mol Plant Sci, Edinburgh EH3 5LR, Midlothian, Scotland
Univ Edinburgh, Inst Mol Plant Sci, Edinburgh EH3 5LR, Midlothian, Scotland
Royal Bot Gardens, Edinburgh EH3 5LR, Midlothian, Scotland
Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA

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ESI Special Topics, November 2005
Citing URL: http://www.esi-topics.com/fmf/maps/november2005-map.html

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