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ESI Special Topics, November
2007 Citing URL: http://www.esi-topics.com/fmf/maps/november2007-map.html
This Research Front on
ANALYSIS OF DNA MICROARRAY DATA
from the field of Mathematics was selected for mapping from the list of Fast Moving Fronts
for November 2007. The map is a diagrammatic
representation of the 32 core papers comprising the front. Each
circle represents a highly cited paper whose bibliographic
information is displayed when the user clicks on the circle. The
lines between circles represent the strongest co-citation links
for each paper (that is, indicating that the papers are frequently cited
together). Papers close to each other on the map are generally
more highly co-cited. The most recent paper(s)
are indicated in red.
Core Papers
Label: Sebat-2004 Title: Large-scale copy number polymorphism in the human genome Journal: SCIENCE, 305 (5683): 525-528 JUL 23 2004 Citations: 361 Authors: Sebat, J;Lakshmi, B;Troge, J;Alexander, J;Young, J;Lundin, P;Maner, S;Massa, H;Walker, M;Chi, MY;Navin, N;Lucito, R;Healy, J;Hicks, J;Ye, K;Reiner, A;Gilliam, TC;Trask, B;Patterson, N;Zetterberg, A;Wigler, M Addresses:
Cold Spring Harbor Lab, POB 100, Cold Spring Harbor, NY 11724 USA
Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Fred Hutchinson Canc Res Ctr, Div Human Biol, Seattle, WA 98109 USA
Karolinska Inst, SE-17176 Stockholm, Sweden
SUNY Stony Brook, Dept Appl Math & Stat, Stony Brook, NY 11794 USA
Columbia Univ, Columbia Genome Ctr, New York, NY 10032 USA
Broad Inst, Cambridge, MA 02139 USA
Label: Snijders-2001 Title: Assembly of microarrays for genome-wide measurement of DNA copy number. Journal: NAT GENET, 29 (3): 263-264 NOV 2001 Citations: 342 Authors: Snijders, AM;Nowak, N;Segraves, R;Blackwood, S;Brown, N;Conroy, J;Hamilton, G;Hindle, AK;Huey, B;Kimura, K;Law, S;Myambo, K;Palmer, J;Ylstra, B;Yue, JP;Gray, JW;Jain, AN;Pinkel, D;Albertson, DG Addresses:
Univ Calif San Francisco, Ctr Comprehens Canc, San Francisco, CA 94143 USA
Univ Calif San Francisco, Ctr Comprehens Canc, San Francisco, CA 94143 USA
Univ Calif San Francisco, Canc Res Inst, San Francisco, CA 94143 USA
Univ Calif San Francisco, Dept Lab Med, San Francisco, CA 94143 USA
New York State Dept Hlth, Roswell Pk Canc Inst, Buffalo, NY 14263 USA
Label: Iafrate-2004 Title: Detection of large-scale variation in the human genome Journal: NAT GENET, 36 (9): 949-951 SEP 2004 Citations: 288 Authors: Iafrate, AJ;Feuk, L;Rivera, MN;Listewnik, ML;Donahoe, PK;Qi, Y;Scherer, SW;Lee, C Addresses:
Brigham & Womens Hosp, Dept Pathol, 20 Shattuck St,Thorn 6-28, Boston, MA 02115 USA
Brigham & Womens Hosp, Dept Pathol, Boston, MA 02115 USA
Harvard Univ, Sch Med, Boston, MA 02115 USA
Hosp Sick Children, Dept Genet & Genom Biol, Toronto, ON M5G 1X8, Canada
Univ Toronto, Toronto, ON, Canada
Massachusetts Gen Hosp, Dept Surg, Boston, MA 02114 USA
Massachusetts Gen Hosp, Pediat Surg Res Labs, Boston, MA 02114 USA
Label: Ishkanian-2004 Title: A tiling resolution DNA microarray with complete coverage of the human genome Journal: NAT GENET, 36 (3): 299-303 MAR 2004 Citations: 220 Authors: Ishkanian, AS;Malloff, CA;Watson, SK;deLeeuw, RJ;Chi, B;Coe, BP;Snijders, A;Albertson, DG;Pinkel, D;Marra, MA;Ling, V;MacAulay, C;Lam, WL Addresses:
British Columbia Canc Res Ctr, 601 W 10th Ave, Vancouver, BC V5Z 1L3, Canada
British Columbia Canc Res Ctr, Vancouver, BC V5Z 1L3, Canada
UCSF Comprehens Canc Ctr, San Francisco, CA 94115 USA
British Columbia Canc Agcy, Genome Sci Ctr, Vancouver, BC V5Z 4E6, Canada
Label: Sharp-2005 Title: Segmental duplications and copy-number variation in the human genome Journal: AMER J HUM GENET, 77 (1): 78-88 JUL 2005 Citations: 136 Authors: Sharp, AJ;Locke, DP;McGrath, SD;Cheng, Z;Bailey, JA;Vallente, RU;Pertz, LM;Clark, RA;Schwartz, S;Segraves, R;Oseroff, VV;Albertson, DG;Pinkel, D;Eichler, EE Addresses:
Univ Washington, Dept Genome Sci, Sch Med, 1705 NE Pacific St, Seattle, WA 98195 USA
Univ Washington, Dept Genome Sci, Sch Med, Seattle, WA 98195 USA
Case Western Reserve Univ, Dept Pathol, Cleveland, OH 44106 USA
Case Western Reserve Univ, Dept Genet, Cleveland, OH 44106 USA
Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA
Univ Calif San Francisco, Ctr Comprehens Canc, San Francisco, CA 94143 USA
Label: Gonzalez-2005 Title: The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility Journal: SCIENCE, 307 (5714): 1434-1440 MAR 4 2005 Citations: 116 Authors: Gonzalez, E;Kulkarni, H;Bolivar, H;Mangano, A;Sanchez, R;Catano, G;Nibbs, RJ;Freedman, BI;Quinones, MP;Bamshad, MJ;Murthy, KK;Rovin, BH;Bradley, W;Clark, RA;Anderson, SA;O'Connell, RJ;Agan, BK;Ahuja, SS;Bologna, R;Sen, L;Dolan, MJ;Ahuja, SK Addresses:
Univ Texas, Hlth Sci Ctr, Vet Adm Res Ctr AIDS & HIV1 Infect, S Texas Vet Hlth Care Syst, 7703 Floyd Curl Dr, San Antonio, TX 78229 USA
Univ Texas, Hlth Sci Ctr, Vet Adm Res Ctr AIDS & HIV1 Infect, S Texas Vet Hlth Care Syst, San Antonio, TX 78229 USA
Univ Texas, Hlth Sci Ctr, Dept Med, San Antonio, TX 78229 USA
Consejo Nacl Invest Cient & Tecn, Lab Biol Celular & Retrovirus, RA-1245 Buenos Aires, DF, Argentina
Hosp Pediat JP Garrahan, Serv Infectol, RA-1245 Buenos Aires, DF, Argentina
Cancer Res UK Beatson Labs, Glasgow G61 1BD, Lanark, Scotland
Wake Forest Univ, Sch Med, Dept Internal Med, Winston Salem, NC 27157 USA
Univ Utah, Dept Human Genet, Salt Lake City, UT 84112 USA
Univ Utah, Dept Pediat, Salt Lake City, UT 84112 USA
SW Fdn Biomed Res, San Antonio, TX 78227 USA
Ohio State Univ, Div Nephrol, Columbus, OH 43210 USA
Wilford Hall USAF Med Ctr, Infect Dis Serv, Lackland AFB, TX 78236 USA
Wilford Hall USAF Med Ctr, Tri Serv AIDS Clin Consortium, Lackland AFB, TX 78236 USA
Wilford Hall USAF Med Ctr, Henry M Jackson Fdn, Lackland AFB, TX 78236 USA
Def Inst Med Operat, Brooks AFB, TX 78235 USA
Label: Tuzun-2005 Title: Fine-scale structural variation of the human genome Journal: NAT GENET, 37 (7): 727-732 JUL 2005 Citations: 111 Authors: Tuzun, E;Sharp, AJ;Bailey, JA;Kaul, R;Morrison, VA;Pertz, LM;Haugen, E;Hayden, H;Albertson, D;Pinkel, D;Olson, MV;Eichler, EE Addresses:
Univ Washington, Sch Med, Dept Genome Sci, 1705 NE Pacific St, Seattle, WA 98195 USA
Univ Washington, Sch Med, Dept Genome Sci, Seattle, WA 98195 USA
Case Western Reserve Univ, Dept Genet, Cleveland, OH 44106 USA
Univ Washington, Dept Med, Seattle, WA 98195 USA
Univ Washington, Univ Washington Genome Sequencing Ctr, Seattle, WA 98195 USA
Univ Calif San Francisco, Ctr Comprehens Canc, San Francisco, CA 94143 USA
Label: deVries-2003 Title: Telomeres: a diagnosis at the end of the chromosomes Journal: J MED GENET, 40 (6): 385-398 JUN 2003 Citations: 82 Authors: de Vries, BBA;Winter, R;Schinzel, A;van Ravenswaaij-Arts, C Addresses:
Univ Nijmegen Hosp, Dept Human Genet 417, POB 9101, NL-6500 HB Nijmegen, Netherlands
St Radboud Hosp, UMC, Dept Human Genet, Nijmegen, Netherlands
ICH, Dept Clin & Mol Genet, London, England
Univ Zurich, Inst Med Genet, CH-8006 Zurich, Switzerland
Label: McCarroll-2006 Title: Common deletion polymorphisms in the human genome Journal: NAT GENET, 38 (1): 86-92 JAN 2006 Citations: 69 Authors: McCarroll, SA;Hadnott, TN;Perry, GH;Sabeti, PC;Zody, MC;Barrett, JC;Dallaire, S;Gabriel, SB;Lee, C;Daly, MJ;Altshuler, DM;Int HapMap Consortium Addresses:
Massachusetts Gen Hosp, Dept Mol Biol, 55 Fruit St, Boston, MA 02114 USA
Massachusetts Gen Hosp, Dept Mol Biol, Boston, MA 02114 USA
Massachusetts Gen Hosp, Ctr Human Genet Res, Boston, MA 02114 USA
Harvard Univ, Broad Inst, Program Med & Populat Genet, Cambridge, MA 02141 USA
MIT, Cambridge, MA 02141 USA
Brigham & Womens Hosp, Dept Pathol, Boston, MA 02115 USA
Harvard Univ, Sch Med, Boston, MA 02115 USA
Massachusetts Gen Hosp, Dept Med, Simches Res Ctr, Boston, MA 02114 USA
Label: Conrad-2006 Title: A high-resolution survey of deletion polymorphism in the human genome Journal: NAT GENET, 38 (1): 75-81 JAN 2006 Citations: 67 Authors: Conrad, DF;Andrews, TD;Carter, NP;Hurles, ME;Pritchard, JK Addresses:
Univ Chicago, Dept Human Genet, 920 E 58th St, Chicago, IL 60637 USA
Univ Chicago, Dept Human Genet, Chicago, IL 60637 USA
Sanger Inst, Wellcome Trust, Genome Dynam & Evolut Grp, Cambridge CB10 1SA, England
Label: Olshen-2004 Title: Circular binary segmentation for the analysis of array-based DNA copy number data Journal: BIOSTATISTICS, 5 (4): 557-572 OCT 2004 Citations: 61 Authors: Olshen, AB;Venkatraman, ES;Lucito, R;Wigler, M Addresses:
Mem Sloan Kettering Canc Ctr, Dept Epidemiol & Biostat, 1275 York Ave, New York, NY 10021 USA
Mem Sloan Kettering Canc Ctr, Dept Epidemiol & Biostat, New York, NY 10021 USA
Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Label: Hinds-2006 Title: Common deletions and SNPs are in linkage disequilibrium in the human genome Journal: NAT GENET, 38 (1): 82-85 JAN 2006 Citations: 49 Authors: Hinds, DA;Kloek, AP;Jen, M;Chen, XY;Frazer, KA Addresses:
Perlegen Sci Inc, 2021 Stierlin Court, Mountain View, CA 94043 USA
Perlegen Sci Inc, Mountain View, CA 94043 USA
Label: Fridlyand-2004 Title: Hidden Markov models approach to the analysis of array CGH data Journal: J MULTIVARIATE ANAL, 90 (1): 132-153 JUL 2004 Citations: 44 Authors: Fridlyand, J;Snijders, AM;Pinkel, D;Albertson, DG;Jain, AN Addresses:
Univ Calif San Francisco, Ctr Comprehens Canc, 2340 Sutter Str,N412, San Francisco, CA 94143 USA
Univ Calif San Francisco, Ctr Comprehens Canc, San Francisco, CA 94143 USA
Label: Hupe-2004 Title: Analysis of array CGH data: from signal ratio to gain and loss of DNA regions Journal: BIOINFORMATICS, 20 (18): 3413-3422 DEC 12 2004 Citations: 40 Authors: Hupe, P;Stransky, N;Thiery, JP;Radvanyi, F;Barillot, E Addresses:
Inst Curie, Serv Bioinformat, 26 Rue Ulm, F-75248 Paris 05, France
Inst Curie, Serv Bioinformat, F-75248 Paris 05, France
Inst Curie, CNRS, UMR 144, F-75248 Paris, France
Label: Wang-2005 Title: A method for calling gains and losses in array CGH data Journal: BIOSTATISTICS, 6 (1): 45-58 JAN 2005 Citations: 37 Authors: Wang, P;Kim, Y;Pollack, J;Narasimhan, B;Tibshirani, R Addresses:
Stanford Univ, Dept Stat, Stanford, CA 94305 USA
Stanford Univ, Dept Stat, Stanford, CA 94305 USA
Stanford Univ, Dept Pathol, Stanford, CA 94305 USA
Stanford Univ, Dept Hlth Res & Policy, Stanford, CA 94305 USA
Label: Chi-2004 Title: SeeGH - A software tool for visualization of whole genome array comparative genomic hybridization data Journal: BMC BIOINFORMATICS, 5: art. no.-13 FEB 9 2004 Citations: 34 Authors: Chi, B;deLeeuw, RJ;Coe, BP;MacAulay, C;Lam, WL Addresses:
British Columbia Canc Agcy, British Columbia Canc Res Ctr, 601 W 10th Ave, Vancouver, BC V5Z 1L3, Canada
British Columbia Canc Agcy, British Columbia Canc Res Ctr, Vancouver, BC V5Z 1L3, Canada
Label: Picard-2005 Title: A statistical approach for array CGH data analysis Journal: BMC BIOINFORMATICS, 6: art. no.-27 FEB 11 2005 Citations: 15 Authors: Picard, F;Robin, S;Lavielle, M;Vaisse, C;Daudin, JJ Addresses:
INRA, Inst Natl Agron Paris Grignon, UMR 518, ENGREF, 16 Rue Claude Bernard, F-75231 Paris, France
INRA, Inst Natl Agron Paris Grignon, UMR 518, ENGREF, F-75231 Paris, France
Univ Paris 11, Equipe Probabil Stat & Modelisat, Orsay, France
Univ Calif San Francisco, Ctr Diabet, San Francisco, CA 94143 USA
Label: Daruwala-2004 Title: A versatile statistical analysis algorithm to detect genome copy number variation Journal: PROC NAT ACAD SCI USA, 101 (46): 16292-16297 NOV 16 2004 Citations: 12 Authors: Daruwala, RS;Rudra, A;Ostrer, H;Lucito, R;Wigler, M;Mishra, B Addresses:
Cold Spring Harbor Lab, 1 Bungtown Rd, Cold Spring Harbor, NY 11724 USA
Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
NYU, Courant Inst Math Sci, New York, NY 10012 USA
NYU, Sch Med, Human Genet Program, New York, NY 10012 USA
Label: Rouveirol-2006 Title: Computation of recurrent minimal genomic alterations from array-CGH data Journal: BIOINFORMATICS, 22 (7): 849-856 APR 1 2006 Citations: 4 Authors: Rouveirol, C;Stransky, N;Hupe, P;La Rosa, P;Viara, E;Barillot, E;Radvanyi, F Addresses:
Univ Paris 11, CNRS, UMR 8623, LRI, Bat 490, F-91405 Orsay, France
Univ Paris 11, CNRS, UMR 8623, LRI, F-91405 Orsay, France
Inst Curie, CNRS, UMR 144, F-75248 Paris 05, France
Inst Curie, Serv Bioinformat, F-75248 Paris 05, France