By Graeme Henkelman, Andri Arnaldsson, and Hannes Jónsson
ESI Special Topics,
September 2007
Citing URL - http://www.esi-topics.com/nhp/2007/september-07-Henkelman_et-al.html
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Graeme Henkelman, Andri Arnaldsson, and Hannes Jónsson
answer a few questions about this month's
new hot paper in the field of Materials Science, general.
The authors have also
sent along images of their work.
From
•>>September 2007
Field:
Materials Science, general
Article Title: A fast and robust algorithm for Bader
decomposition of charge density
Authors:
Henkelman, G;Arnaldsson, A;Jonsson, H
Journal: COMPUT MATER SCI
Volume: 36
Issue: 3
Page: 354-360
Year: JUN 2006
* Univ Texas, Dept Chem & Biochem, Austin, TX 78712
USA.
* Univ Texas, Dept Chem & Biochem, Austin, TX 78712
USA.
* Univ Washington, Dept Chem 351700, Seattle, WA 98195
USA.
* Univ Iceland, Fac Sci, IS-107 Reykjavik, Iceland.
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Why
do you think your paper is highly cited?
Our paper is highly cited because it describes a simple but
useful computational tool for analyzing how charge is
distributed in large electronic structure calculations. This
so-called Bader partitioning of charge density has been used for
many years, but the methods for doing the analysis are geared
towards small molecular systems with well-defined bonding
geometries.
Now, with the widespread use of plane-wave based density
functional theory, the community needs more efficient
computational tools to analyze large molecules and condensed
phase materials. The algorithm described in this paper is faster
and more robust than other methods for these large and complex
systems. It is also implemented in a freely available software
tool, which is gaining popularity in the field.
Does
it describe a new discovery, methodology, or synthesis of
knowledge?
The paper describes an efficient and robust algorithm for
partitioning electronic charge into Bader volumes. The algorithm
is based upon a charge density grid, which can be generated from
plane-wave based density functional theory calculations.
Would
you summarize the significance of your paper in layman’s terms?
The algorithm in our paper allows computational researchers
in the fields of chemistry and materials science to analyze
properties of individual atoms more efficiently when they do
calculations of large systems.
How
did you become involved in this research, and were there any
particular problems encountered along the way?
Before this paper, we were working on other methods for doing
these kinds of calculations. When we had the idea behind the
algorithm described in our paper, we realized that it was much
simpler and more robust. The subsequent implementation of the
method into a piece of software was not difficult. In fact, the
biggest challenge we faced was getting the manuscript published.
Our algorithm is quite simple, so it can appear obvious to
people who have worked on related methods. After a year in the
review process, we are happy to see it published and well
received by the community.
Where
do you see your research leading in the future?
The charge density population analysis we describe is useful
for determining partial charges on atoms. There are, however,
many other local properties that can be calculated based upon a
Bader partitioning. In the future, we will extend our tools to
calculate more properties of atoms in molecules and in materials
systems, such as multipole moments, local densities of states,
and local energies.
Density functional theory is a very powerful method for
calculating the total energy of extended systems, but it will be
even more useful if we can also determine local properties from
the charge density.
Are
there any social or political implications for your research?
This research, in itself, is not going to have any
significant social or political implication. The field of
computational material science, however, is going to have
increasing implications, and tools like the one we have
developed will help us use computers to compliment the
experimental work being done to develop new materials and
understand them at the microscopic scale. As computers get
faster, and computational methods improve, we will one day be
able to design materials from first-principles calculations.
Graeme Henkelman, Ph.D.
Asst. Professor of Chemistry
Dept. of Chemistry & Biochemistry
University of Texas at Austin
Austin TX, USA
Andri Arnaldsson, Ph.D.
Faculty of Science
University of Iceland
Reykjavík, Iceland
Hannes Jónsson, Ph.D.
Faculty of Science
University of Iceland
Reykjavík, Iceland
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A Closer Look...
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Below
are images sent in by Graeme Henkelman, Andri Arnaldsson, and Hannes Jónsson which correspond with the featured
paper, or current research. |
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Figure 1:
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Figure
1:
Ascent
trajectories (A-C) along the charge density
gradient are used to find Bader volumes (D).
These trajectories are confined to points in
a charge density grid, so that the method is
extremely robust and scales linearly with
system size.
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Figure 2:
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Figure
2:
Two views of
the Bader surface around a three atom boron
cluster in a silicon crystal, found with our
grid-based Bader analysis from a density
functional theory calculation. Integration
over the Bader region indicates that 1.5
electrons have been transferred from the
silicon atoms to the boron cluster,
suggesting that the cluster has about 50% of
the electronic activity of three
substitutional boron atom.
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ESI Special Topics,
September 2007
Citing URL - http://www.esi-topics.com/nhp/2007/september-07-Henkelman_et-al.html
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